Code as an Analogy of DNA?

There are no abstractions in that process.

There are none AFAIK that have an elaborate system for working around the “messages” that require the start character to be removed.

An intelligently designed genetic code would have a beginning that is as intelligently designed as the end, with a start codon that allows the desired N-terminal amino acid residue to follow it.

I’m having trouble parsing that sentence, but whatever you mean, you’re missing the point that (at least in bacteria) suppressor mutations in tRNA genes that cause them to recognize stop codons, cause amino acids to be inserted instead of stopping. The run-on proteins are tolerated, which is why stop codons are amenable to change.