I fail to understand. @glipsnort is not proposing a bottleneck of two. So why should he have to confront evidence against something he doesn’t claim? Nor is phylogenetic inference the concern of population geneticists, and the evidence from population genetics was the subject of that article. I remain mystified by your belligerence on my behalf.
I don’t even think you have weakened the case, which depends not at all on Ayala’s focus, on strictly human alleles, and I think you have misunderstood the paper on convergence.
Then there was no bottleneck of two.
I’m pretty sure that without interbreeding between Adam’s and Eve’s lineages they would have no descendants. Perhaps there are a few words missing there? And of course that’s what “sole-genetic progenitor” actually means to people who value language.
There is no argument. You are trying to create one.