There is no need for it to include those things, since human free will does not exist until humans exist, and God speaking to his worshippers does not happen until human beings exist, and Behe is talking about the process that leads from the Big Bang UP TO human beings, not how God relates to human beings after they are created. You are caught up in the same anachronistic confusion that Darrel Falk was perpetually in, when he kept going on about the need of “Wesleyan freedom” for God’s creatures. Sea slugs don’t have free will, and there is no need to construct an evolutionary model to give them free will. And mushrooms don’t pray or worship, so there is no need to construct an evolutionary model that allows them to do so. You’re trying to make the Pool Shot analogy into a complete Christian theology of God’s relationship to his creatures, and that’s not what the analogy is for. It has a single, very limited, very narrow purpose: to show that intelligent design is in principle compatible with a wholly naturalistic (no miracle) evolutionary process. You’re trying to make it do work it wasn’t meant to do, and that is why you keep distorting Behe’s meaning. If you would just let Behe make the limited point he wants to make, and stop trying to bring his thought into harmony with yours, you would not be having the problem you are having.
it’s perfectly understandable that a pro-design Christian, for pedagogical purposes, would acknowledge that a wholly naturalistic process of evolution, that required no miracles, interventions, special divine action, etc. (pick your own term) might have been set up God. That implies no endorsement of the idea by the pro-design Christian. Professors in philosophy, history, and all kinds of subjects set forth alternative hypotheses for many things, without implying that they personally agree with all those hypotheses. You are making difficulties out of something that is easy to understand.