Continuing the discussion from Ratio of Beneficial Mutations to Others:
So, I found a place to download Mendel’s accountant. http://mendelsaccount.sourceforge.net/
MA is a “forward simulator”. In the past, we have pointed people to slim (Messer Lab — SLiM | Messer Lab, Mantha: Genetics for Dummies) another forward simulator.
It would be interesting to see if the results from MA and SLiM correspond on parallel experiments. Perhaps someone (@jordan?) wants to give it a shot.