The alternative model simply starts at different points. It eliminates having to mathematically explain the origin of new genes and complex biological structures generated by gene families. In reality population genetics starts from existing populations.
Who has rigorously tested Winston’s model as Michael Lynch proposed an alternative to Behe’s model?
Yes.
The important data in biology for testing design vs common descent however is not historical. The gene data base is increasing dramatically. Genes are stronger representations of function than raw sequences.
My comment was about methodological naturalism and not Winstons engagement on this forum.
What is the mechanism in biology that does this? Is the claim that simply the sequence change will be directed by selection? Selection does not happen until some beneficial function arises. There is no empirical basis for believing that SNP’s from reproduction are directional on their own. Especially given the current paradigm is neutral theory.