It is not at all clear that Matzke’s work has anything to do with Behe’s long-debunked and long-forgotten “design inference”.
… and eventually I somehow got a job in New Zealand and occasionally find myself involved in not entirely dissimilar debates there. And also somehow found collaborators that wanted to work on the bacterial flagellum, and somehow happened on some new methods using protein structure to enhance phylogenies that are letting us make progress that was previously not imaginable.[1]